rs30888597 SNP Detail

Summary

• ID
  rs30888597
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:136149390 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAAAGCCA AGAGCCATTT
  TAGAAAACAC ATAGGATGTT GTCTGTCTAT CATCTTCAAA CATCACAAAT GCAAACCAAT
  TCCCCGGTCT TAAAAGCAAG AATTCCTGTG GTACCCACAA GAGAAGTCAG GGTAGAGAGC
  TGGGCTGTGG GGACTCATGA GACCAACTTA GGTTGGGGTC TGGCCAGCTG GCCCTGAGAT
  K
  AGTCGTGTCC ACAAGTGCTC TGCAAGTCGC CTGAGGAAGA TGGAGCACAG GGCAGCTTCA
  TGTGAAACAG TTGCAGCTAT CACTTAGGGA AACTGGGGGG CTTTGTTACT TTTGCCCTTC
  AACAGATACA GTGCTCTGGA GTCTGAGGCT GAGTCCCTGT GACCCACACG GAACCCAGAA
  ATCATTTTCA ACTGCTTGAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss49680896	NES12977978	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	G		T	T	G
ss145554244	ENSMUSSNP917900	ENSEMBL	ENSEMBL_Sanger	f	SNP								T				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs30888597					SNP	T	T	T	T	T	T	G	T	T	T	G	G	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49680896	NES12977978	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:136149390 () rs orientation: forward

Symbol	Name	Function Class
Gm26568	predicted gene, 26568	within coordinates
Inava	innate immunity activator	within coordinates
Tssr229	transcription start site region 229	1260 bp upstream
Tssr9051	transcription start site region 9051	918 bp downstream