rs30888835 SNP Detail

Summary

• ID
  rs30888835
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:136140338 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGAAGCTG ATGCCCTCAT
  CTAGCCAAAG TGGGCACTGC ACACACATGG TACGCCCATA TACATTTAAA AAAAAAAACC
  CTAAAATGTA TTTTTCTGGG CCTAACAGAT GACAGATGGC TAAAACACAA AACCAAATAC
  CTGCCTGACA AGTGTGAAAC CCTGGGTTCC ATCCCCAACA CAGGAAAAAT AAAGTTCAAA
  Y
  TTACCACAAA ATAAGTTACA TCCAAAATCA AGTCCTTACT GGCCACAGTT AATAGCTACA
  TTGATGTTCA GGTCTGAGAT AAGGATGCCC ACAGCTTCTC TAGAGGCCCT GGAACTCTCT
  TCCCTTCCCA CCCAACCCCT AGCATGGAAC AACCCCCAGC CTAATAAAGC CAGGTCCTTG
  AAAGCCAGAT TCCTACAGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49680952	NES12978168	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30888835					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49680952	NES12978168	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:136140338 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Inava	innate immunity activator			931 bp downstream
Mroh3	maestro heat-like repeat family member 3			Intron
				Splice-Site
Rr419387	regulatory region 419387			218 bp proximal
Rr419388	regulatory region 419388			408 bp proximal
Tssr13921	transcription start site region 13921			215 bp downstream