rs30888836 SNP Detail

Summary

• ID
  rs30888836
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:136140302 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAACGGTTA AAAGTGCTCA
  CGGTAACTCC AGTTCCAGGG AAGCTGATGC CCTCATCTAG CCAAAGTGGG CACTGCACAC
  ACATGGTACG CCCATATACA TTTAAAAAAA AAAACCCTAA AATGTATTTT TCTGGGCCTA
  ACAGATGACA GATGGCTAAA ACACAAAACC AAATACCTGC CTGACAAGTG TGAAACCCTG
  R
  GTTCCATCCC CAACACAGGA AAAATAAAGT TCAAACTTAC CACAAAATAA GTTACATCCA
  AAATCAAGTC CTTACTGGCC ACAGTTAATA GCTACATTGA TGTTCAGGTC TGAGATAAGG
  ATGCCCACAG CTTCTCTAGA GGCCCTGGAA CTCTCTTCCC TTCCCACCCA ACCCCTAGCA
  TGGAACAACC CCCAGCCTAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss49680953	NES12978167	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	A	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs30888836					SNP	G	G	G	A	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49680953	NES12978167	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:136140302 () rs orientation: forward

Symbol	Name	Function Class
Inava	innate immunity activator	967 bp downstream
Mroh3	maestro heat-like repeat family member 3	Intron
Rr419387	regulatory region 419387	254 bp proximal
Rr419388	regulatory region 419388	444 bp proximal
Tssr13921	transcription start site region 13921	251 bp downstream