rs30888840 SNP Detail

Summary

• ID
  rs30888840
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:136139280 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GGATCCAAC AGCTTGTAAT GAGACCAGCA
  GTCAGGCCTG ATGAGAGTCT GGTCTTCTTA GTGATGCAGG TTTAGTATAG GGGAAGGCTG
  CAGGAGGCAG CCTGACCATT TACAAGGACA GGGTTGGAGA TAGCAGAACA CTTGTTCAGC
  R
  TGTCCTGAGG CTCTGCATTT ATCCATGGCA TGAGGGCaga ataagaagag aaaagaaaag
  aaaagaaaag aaaagaaaag aaaagaaaag aagaaaagaa aagaaaagaa gaggggaggg
  gaggggaggg gaggggaggg gaggggaggg                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49680957	NES12978243	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	A	A	A	G	A	A	G		G	A	A	G		G
ss319995057	CHEV_1_138108119	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30888840					SNP	G	A	A	A	A	A	G	A	A	G	G	G	A	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49680957	NES12978243	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:136139280 () rs orientation: forward

Symbol	Name	Function Class
Inava	innate immunity activator	1989 bp downstream
Mroh3	maestro heat-like repeat family member 3	Intron
Rr419387	regulatory region 419387	1276 bp proximal
Rr419388	regulatory region 419388	1466 bp proximal
Tssr13921	transcription start site region 13921	1273 bp downstream