rs30888842 SNP Detail

Summary

• ID
  rs30888842
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:136139075 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATGAGCCT GCAGAAGGAG
  CAGGCCTTAG AGAGTAGTTA TGAAAGGGAT AGCCCTTAGA GTGACATCTC TAGCAAGGGC
  CAGGGAGCCA TTATCACTTC CAAACTGCCT CAGTAAGATT AGTGATACCC AGGCCTACAG
  AAAACTGCTT ACCTGATAAA CTTGGCTCTA ACAAGACATC GTACATCGAT GACCGAAATG
  Y
  TACTCTGTTC AGATTTCTCT CCTCGGAGTG TAGATTCATT TGCCCACCCA GGACAGGATC
  CAACAGCTTG TAATGAGACC AGCAGTCAGG CCTGATGAGA GTCTGGTCTT CTTAGTGATG
  CAGGTTTAGT ATAGGGGAAG GCTGCAGGAG GCAGCCTGAC CATTTACAAG GACAGGGTTG
  GAGATAGCAG AACACTTGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49680959	NES12978241	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30888842					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49680959	NES12978241	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:136139075 () rs orientation: forward

Symbol	Name	Function Class
Mroh3	maestro heat-like repeat family member 3	Coding-NonSynonymous
Rr419387	regulatory region 419387	1481 bp proximal
Rr419388	regulatory region 419388	1671 bp proximal
Tssr13921	transcription start site region 13921	1478 bp downstream