rs30888843 SNP Detail

Summary

• ID
  rs30888843
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:136138966 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGAGCTTTC AATATCTCAG ACCATATCAA
  CGCCCAGCTA AGCTCCAGGC CTCTGAGGGA GATGAGCCTG CAGAAGGAGC AGGCCTTAGA
  GAGTAGTTAT GAAAGGGATA GCCCTTAGAG TGACATCTCT AGCAAGGGCC AGGGAGCCAT
  Y
  ATCACTTCCA AACTGCCTCA GTAAGATTAG TGATACCCAG GCCTACAGAA AACTGCTTAC
  CTGATAAACT TGGCTCTAAC AAGACATCGT ACATCGATGA CCGAAATGTT ACTCTGTTCA
  GATTTCTCTC CTCGGAGTGT AGATTCATTT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49680960	NES12978240	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	T	T	C	T	T	C		C	T	T	C		C
ss319995056	CHEV_1_138107805	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30888843					SNP	C	T	T	T	T	T	C	T	T	C	C	C	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49680960	NES12978240	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:136138966 () rs orientation: forward

Symbol	Name	Function Class
Mroh3	maestro heat-like repeat family member 3	Intron
Rr419387	regulatory region 419387	1590 bp proximal
Rr419388	regulatory region 419388	1780 bp proximal
Tssr13921	transcription start site region 13921	1587 bp downstream