rs30889035 SNP Detail

Summary

• ID
  rs30889035
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:136073764 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAGTACAC GAGAGGGTCT
  CTGGGCTCTA ACATTTGGGC TGTGCTGGAA AGTCAGCAGC TCTGGTAATA CAGGCTCTGT
  CCTGGAGATG GCCTTCATGG GAGAAGGCTC TAGAAAGGCG AGTCACCTTA GTATTTCTCA
  CAGGAACCTG GCCAGGCTCC TCTGAAACAT GTGGTCATGT AGTTCTGATT CCTAGCATCT
  M
  GTTTCCTCTA CCAAGGAGCC CTGCTCTGCT GTGTTTAATG GGTTTGGAGC CACCCTACTC
  TTTTACCTCC CAACCCTGAT GCTTTTCCTG GATCTTGTTG ACCCTCAGAG GAATGGACAG
  GGCTGAGGCT TGTCCCTGTA TACTGTATCT TTCCTGTGCA CCCATAGCTG CTGCTTTCCC
  CATAAGGGAC CTGTATTTTA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49681301	NES12979905	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30889035					SNP	A	A	A	A	A	A	A	A	A	A	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49681301	NES12979905	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:136073764 () rs orientation: forward

Symbol	Name	Function Class
Kif21b	kinesin family member 21B	within coordinates
Rr19444	regulatory region 19444	1364 bp distal
Rr30732	regulatory region 30732	38 bp proximal
Tssr9046	transcription start site region 9046	791 bp downstream
Tssr9047	transcription start site region 9047	523 bp upstream
Tssr9048	transcription start site region 9048	626 bp upstream