rs30889037 SNP Detail

Summary

• ID
  rs30889037
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:136073526 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CCTGACCCT GGCACATGGC GAGAACCCTG
  CTTCTGTCTC TGGCCCTCAT GAGGCCCTTC CTCTGCCCCC TAAGTACCTA TCTGTATCTT
  TTGAGCTGAG ACTCGTCTCA GTACAGCAGC GGTTTCCTTC ACTTCTGGTC TGCCAGCTTC
  R
  AGAGGTATCA GCCTGAACTG GGCAACCGTG AGCTTTGGGG AGTACACGAG AGGGTCTCTG
  GGCTCTAACA TTTGGGCTGT GCTGGAAAGT CAGCAGCTCT GGTAATACAG GCTCTGTCCT
  GGAGATGGCC TTCATGGGAG AAGGCTCTAG                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49681303	NES12979903	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	A	A	A	G	A	G		A	G	A		A
ss319994871	CHEV_1_138042365	CHEVERUD	SCREENING_POP	f	SNP										G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30889037					SNP	G	A	A	A	A	A	G	A	G	G	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49681303	NES12979903	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:136073526 () rs orientation: forward

Symbol	Name	Function Class
Kif21b	kinesin family member 21B	within coordinates
Rr19444	regulatory region 19444	1126 bp distal
Rr30732	regulatory region 30732	276 bp proximal
Rr407175	regulatory region 407175	1986 bp distal
Tssr9046	transcription start site region 9046	553 bp downstream
Tssr9047	transcription start site region 9047	761 bp upstream
Tssr9048	transcription start site region 9048	864 bp upstream