rs30889038 SNP Detail

Summary

• ID
  rs30889038
• Variation Type
  SNP
• Alleles
  A/G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:136073520 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGGAAGCCT GACCCTGGCA CATGGCGAGA
  ACCCTGCTTC TGTCTCTGGC CCTCATGAGG CCCTTCCTCT GCCCCCTAAG TACCTATCTG
  TATCTTTTGA GCTGAGACTC GTCTCAGTAC AGCAGCGGTT TCCTTCACTT CTGGTCTGCC
  D
  GCTTCAAGAG GTATCAGCCT GAACTGGGCA ACCGTGAGCT TTGGGGAGTA CACGAGAGGG
  TCTCTGGGCT CTAACATTTG GGCTGTGCTG GAAAGTCAGC AGCTCTGGTA ATACAGGCTC
  TGTCCTGGAG ATGGCCTTCA TGGGAGAAGG                                 
  
  D = A/G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss49681304	NES12979902	PERLEGEN	MM_PANEL2	f	SNP		A	A	A	A	A	T		A		A	A		A
ss145553480	ENSMUSSNP6675984	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A						G
ss319994870	CHEV_1_138042359	CHEVERUD	SCREENING_POP	f	SNP										G			A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs30889038					SNP	G	A	A	A	A	A	T	G	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49681304	NES12979902	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:136073520 () rs orientation: forward

Symbol	Name	Function Class
Kif21b	kinesin family member 21B	within coordinates
Rr19444	regulatory region 19444	1120 bp distal
Rr30732	regulatory region 30732	282 bp proximal
Rr407175	regulatory region 407175	1980 bp distal
Tssr9046	transcription start site region 9046	547 bp downstream
Tssr9047	transcription start site region 9047	767 bp upstream
Tssr9048	transcription start site region 9048	870 bp upstream