rs30889039 SNP Detail

Summary

• ID
  rs30889039
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:136073347 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    taagctagg gctacagaaa cacttggtag
  ctgaaatgtt tcctgcgtcc gatgggGCCT AAGATCTCAG ACCTTGGCTG ATTCTAGCCC
  TGGCCTGGTC ACATCGCCAG TCTAAACTTC ATCTGCAAAG TGGGCTTGAC ATCTCTCCTT
  Y
  CTTAGGGGCT AGTAAGTCTG GCATGGAAGC CTGACCCTGG CACATGGCGA GAACCCTGCT
  TCTGTCTCTG GCCCTCATGA GGCCCTTCCT CTGCCCCCTA AGTACCTATC TGTATCTTTT
  GAGCTGAGAC TCGTCTCAGT ACAGCAGCGG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45077885	mCV27592252	ABI	CRAMUS_MOUSE	f	SNP	C	C	T					T
ss49681305	NES12979901	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	T	T		C	C	T	C		C	T	C	C		T
ss145553476	ENSMUSSNP5986676	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T
ss319994869	CHEV_1_138042186	CHEVERUD	SCREENING_POP	f	SNP													C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30889039					SNP	C	C	T	T	T	T	T	T	C	C	T	C	C	C	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49681305	NES12979901	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:136073347 () rs orientation: forward

Symbol	Name	Function Class
Kif21b	kinesin family member 21B	within coordinates
Rr19444	regulatory region 19444	947 bp distal
Rr30732	regulatory region 30732	455 bp proximal
Rr407175	regulatory region 407175	1807 bp distal
Tssr9046	transcription start site region 9046	374 bp downstream
Tssr9047	transcription start site region 9047	940 bp upstream
Tssr9048	transcription start site region 9048	1043 bp upstream