rs30889040 SNP Detail

Summary

• ID
  rs30889040
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:136073121 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAGAGGAG CAGGGCATCA
  TCCCAAGGGC CATTGCACAT CTCTTCAGGG GCATCGACGA ACGCAAGCGG CGGGCACAAG
  AGAAGGGTGT GACTGGGCCT GAGTTCAAAG TCAGTGCTCA ATTCCTGGAG GTACTGTGGC
  CTTGGATGGT GGTCGGGTGG GAGATGTGTC AGAACCTAAG ACCATGGAAG CTGATGCCCC
  M
  CACCAGTATA GAGAAATAAG CCTAGGGAGC CCTGGAGTTA TCTATAGGAG ATGAGTGCCC
  TGTTTCTGAG AGTGTCTAAG CTAGGGCTAC AGAAACACTT GGTAGCTGAA ATGTTTCCTG
  CGTCCGATGG GGCCTAAGAT CTCAGACCTT GGCTGATTCT AGCCCTGGCC TGGTCACATC
  GCCAGTCTAA ACTTCATCTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49681306	NES12979940	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30889040					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49681306	NES12979940	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:136073121 () rs orientation: forward

Symbol	Name	Function Class
Kif21b	kinesin family member 21B	within coordinates
Rr19444	regulatory region 19444	721 bp distal
Rr30732	regulatory region 30732	681 bp proximal
Rr407175	regulatory region 407175	1581 bp distal
Tssr9046	transcription start site region 9046	148 bp downstream
Tssr9047	transcription start site region 9047	1166 bp upstream
Tssr9048	transcription start site region 9048	1269 bp upstream