rs30889042 SNP Detail

Summary

• ID
  rs30889042
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:136072831 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACAAGAGA GCAGTCACTC
  AAGGCCCATT GTGTGCTTTT GTCTGGCTTC TGAGTTATGG CTGCATGGCT GGTTAGCAGA
  AGCAGGCTTT CATCAGGGAA TTCTACAGGG TTTGTCTCTG GGATAGAAGA GGTTCACTGG
  TCTAGAGGTA ATGGGTAAGA GGATTTGGTC CACGCCAAGG CTTCTGGTTC CCCAGAGGGG
  M
  CAAGTTACCA CCTGTACTCT GTCTTTGCCC GTGCAGACAG GGGCTGGGAA GACATATACT
  ATGGGCACCG GCTTTGACAC AGTGACATCA GAAGAGGAGC AGGGCATCAT CCCAAGGGCC
  ATTGCACATC TCTTCAGGGG CATCGACGAA CGCAAGCGGC GGGCACAAGA GAAGGGTGTG
  ACTGGGCCTG AGTTCAAAGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss49681308	NES12979938	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs30889042					SNP	A	A	A	A	A	A	A	A	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49681308	NES12979938	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:136072831 () rs orientation: forward

Symbol	Name	Function Class
Kif21b	kinesin family member 21B	within coordinates
Rr19444	regulatory region 19444	431 bp distal
Rr30732	regulatory region 30732	971 bp proximal
Rr407175	regulatory region 407175	1291 bp distal
Tssr9046	transcription start site region 9046	135 bp upstream
Tssr9047	transcription start site region 9047	1456 bp upstream
Tssr9048	transcription start site region 9048	1559 bp upstream