rs30889227 SNP Detail

Summary

• ID
  rs30889227
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:190802333 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGCGA GTCTGGTGAG ACGCTTATAT
  Y
  TAAATCCCTA CACAGTATTT TACCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss44973545	mCV23579864	ABI	CRAMUS_MOUSE	f	SNP	T	T	C
ss146501465	ENSMUSSNP1688660	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs30889227					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:190802333 () rs orientation: forward

Symbol	Name	Function Class
Nsl1	NSL1, MIS12 kinetochore complex component	Intron
Rr426039	regulatory region 426039	1484 bp distal
Rr426040	regulatory region 426040	1420 bp proximal
Tssr10723	transcription start site region 10723	937 bp downstream