rs30889293 SNP Detail

Summary

• ID
  rs30889293
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:51368188 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTTCATTG TGGCCTGTGA
  ACACCCAAAG AAGGAAGACC CTCCCTACCA ACTAGTGCCT GTGCACTTAG ATAAGATTGT
  GTGAGGCTAG GCCTTTTCTT CTGTTTGATA CAGGTTCTCT TACAGTTTAT TCCACTTTGC
  CTTCTGTTCC CACAGAAAAG GGAAGGTGTT GGAAGAATTA AGATGCCTAC GCTATCAAAA
  Y
  GGAGCTTAAA AAAAAAGAGT GCATGGGTTA TGATGGAGCT CCGTCAATGA GCACTTGCTT
  AGTGCACAGA GGTCCCTGGG TTCTATCATC ATACTACCCC CCACCAAAAT AGAAAGAAAG
  AAGATTATTT TCTGCTCTGG GGTTACCTTT GTTGAAGGAG GAATATAAGA AAAGTATAAA
  GAAGGACCAA GCCGCTGAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49182467	NES12491434	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30889293					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49182467	NES12491434	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:51368188 () rs orientation: forward

Symbol	Name	Function Class
Rnase6	ribonuclease, RNase A family, 6	within coordinates
Rr404085	regulatory region 404085	1753 bp downstream
Rr491779	regulatory region 491779	1653 bp distal
Rr491780	regulatory region 491780	294 bp proximal
Rr491781	regulatory region 491781	1718 bp proximal
Tssr125412	transcription start site region 125412	1805 bp downstream
Tssr125413	transcription start site region 125413	1784 bp downstream
Tssr125414	transcription start site region 125414	1738 bp downstream
Tssr125415	transcription start site region 125415	1713 bp downstream
Tssr125416	transcription start site region 125416	1681 bp downstream
Tssr125417	transcription start site region 125417	1659 bp downstream
Tssr125418	transcription start site region 125418	1618 bp downstream
Tssr125419	transcription start site region 125419	1592 bp downstream