rs30889320 SNP Detail

Summary

• ID
  rs30889320
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:136147743 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTTCGGAT GGGGACCACG
  TGGTAAGAGG CAGCATCCAG CACCCACAGG CTGGAAGGGT TGGGCTGGTC CTGAGGAGTG
  GTGGCCGGGC TGCTGCAAAG GGGTCGAAGG TAAGTCAGTG ACAGCAACGT CTTTATTTAA
  AGACTCGAGA CAGGGAGCCC CGAAGGGAAC AGTGCAAAGC GCCAGCACCC AACACACCTC
  Y
  AGCATCACAT AGCTAAGGAG TGTGATCGCC CGCACATTGC CCCCATCCAT GGCCCCAGTC
  TAGACCACTG TGTCACTTTC CCTCTGTTCT GGACTGTCCC CTACTCCCTT CCTCCCCAGT
  CTGACCTGGA CTCGCTACTG AGCTCAGAAG ACTTCCTGGG CTTCTCATAG GGGTGGTCCA
  GGCTGGTCTC CTTCCAGGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49680909	NES12977965	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	C	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30889320					SNP	T	T	T	T	T	C	T	T	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49680909	NES12977965	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:136147743 () rs orientation: forward

Symbol	Name	Function Class
Gm26568	predicted gene, 26568	within coordinates
Inava	innate immunity activator	within coordinates
Tssr229	transcription start site region 229	379 bp downstream
Tssr9051	transcription start site region 9051	725 bp upstream