rs3088938 SNP Detail

Summary

• ID
  rs3088938
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  103
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:11022350 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        AGCCC AGTGTAGCAA GTCACTGCAA
  Y
  ATGTTAAAAG TCCATCTTAT ACTAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/Sv	A	A/J	AKR	AKR/J	BALB/cBy	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/He	C3H/HeJ	C57BL/6	CAST/EiJ	DBA/2	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss4325804	M-10854-1	WIMOUSESNPS	MITROCHE_POP	f	SNP		T	T		T		T			T		T	C	T
ss52593815	NES15688337	PERLEGEN	MM_PANEL2	r	SNP	A			A		A		A	A		A		G		A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/Sv	A	A/J	AKR	AKR/J	BALB/cBy	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/He	C3H/HeJ	C57BL/6	CAST/EiJ	DBA/2	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs3088938					SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52593815	NES15688337	PERLEGEN	MM_PANEL	r	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:11022350 () rs orientation: reverse

Symbol	Name	Function Class
2610020C07Rik	RIKEN cDNA 2610020C07 gene	within coordinates
Cpgi7962	CpG island 7962	634 bp distal
Gm60496	predicted gene, 60496	within coordinates
Rr404684	regulatory region 404684	967 bp downstream
Rr511716	regulatory region 511716	1630 bp distal
Rr511717	regulatory region 511717	1086 bp distal
Rr511718	regulatory region 511718	106 bp distal
Rsl1d1	ribosomal L1 domain containing 1	1194 bp upstream
Tssr137080	transcription start site region 137080	1038 bp downstream
Tssr140008	transcription start site region 140008	1174 bp upstream