rs3088939 SNP Detail

Summary

• ID
  rs3088939
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  103
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:11022270 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CAAGG ACTTGTATTC TACAAGTTAA
  R
  TTAGGACAAG GTCCTCCCTC AACAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/Sv	A	AKR	BALB/cBy	C3H/He	C57BL/6	CAST/EiJ	DBA/2
ss4325805	M-10854-2	WIMOUSESNPS	MITROCHE_POP	f	SNP	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/Sv	A	AKR	BALB/cBy	C3H/He	C57BL/6	CAST/EiJ	DBA/2
rs3088939					SNP	A	A	A	A	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:11022270 () rs orientation: reverse

Symbol	Name	Function Class
2610020C07Rik	RIKEN cDNA 2610020C07 gene	within coordinates
Cpgi7962	CpG island 7962	554 bp distal
Gm60496	predicted gene, 60496	within coordinates
Rr404684	regulatory region 404684	887 bp downstream
Rr511716	regulatory region 511716	1550 bp distal
Rr511717	regulatory region 511717	1006 bp distal
Rr511718	regulatory region 511718	26 bp distal
Rsl1d1	ribosomal L1 domain containing 1	1114 bp upstream
Tssr137080	transcription start site region 137080	958 bp downstream
Tssr140008	transcription start site region 140008	1094 bp upstream