rs3088988 SNP Detail

Summary

• ID
  rs3088988
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  103
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:75423739 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              TGAGCTCTGC CTTGCCTGAA
  GTGCTAACAG TGGAAAGTAC CTTCTAACAG TTGAGGAAGT GTGGCCAGAC TTGGAAAATA
  CACAGTAATG TTAAGAAAAG CCCAACCACA TCCACAGCGA GCCCTGAGAA GTGAGAGAGC
  TTTGGGCATC TGAGATAACG GCCCCTGTTG CTCTCCTCCC CCACCCTTGG GTACAAGTTC
  W
  GTTGTCCTGC ACTTCACTTG GCCCTGATTG TTCATTCCCT AAATCTCTAG GCACTTTTTG
  TATTCTAGTT TGAGTCGAAA CCAGTAACCA TATTTGTACA TTAGCAATGG CAACACAAGC
  TCCCAGTTGT TCCTTTAGAA TCTCTGATAA CAAGGTCAAT CATACACACA CACACACACA
  CACACACACA CACACACACA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/Sv	A	AKR	BALB/cBy	C3H/He	C57BL/6	CAST/EiJ	DBA/2
ss4325854	M-09291-1	WIMOUSESNPS	MITROCHE_POP	f	SNP	A	A	A	A	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/Sv	A	AKR	BALB/cBy	C3H/He	C57BL/6	CAST/EiJ	DBA/2
rs3088988					SNP	A	A	A	A	A	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:75423739 () rs orientation: reverse

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Lcp1	lymphocyte cytosolic protein 1			Intron
				Noncoding-Transcript-Variant
Rr495439	regulatory region 495439			within coordinates
Tssr4481	transcription start site region 4481			1401 bp downstream
Tssr4482	transcription start site region 4482			401 bp upstream
Tssr126634	transcription start site region 126634			982 bp upstream