rs3088990 SNP Detail

Summary

• ID
  rs3088990
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  103
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:75423698 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              TTCTAACAGT TGAGGAAGTG
  TGGCCAGACT TGGAAAATAC ACAGTAATGT TAAGAAAAGC CCAACCACAT CCACAGCGAG
  CCCTGAGAAG TGAGAGAGCT TTGGGCATCT GAGATAACGG CCCCTGTTGC TCTCCTCCCC
  CACCCTTGGG TACAAGTTCA GTTGTCCTGC ACTTCACTTG GCCCTGATTG TTCATTCCCT
  W
  AATCTCTAGG CACTTTTTGT ATTCTAGTTT GAGTCGAAAC CAGTAACCAT ATTTGTACAT
  TAGCAATGGC AACACAAGCT CCCAGTTGTT CCTTTAGAAT CTCTGATAAC AAGGTCAATC
  ATACACACAC ACACACACAC ACACACACAC ACACACACAC GGGGCAGGGG GTGGGGTGGG
  CAGGGAGGAG GACGAGTCAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/Sv	A	AKR	BALB/cBy	C3H/He	C57BL/6	CAST/EiJ	DBA/2
ss4325856	M-09291-3	WIMOUSESNPS	MITROCHE_POP	f	SNP	A	A	A	A	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/Sv	A	AKR	BALB/cBy	C3H/He	C57BL/6	CAST/EiJ	DBA/2
rs3088990					SNP	A	A	A	A	A	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:75423698 () rs orientation: reverse

Symbol	Name	Function Class
Lcp1	lymphocyte cytosolic protein 1	within coordinates
Rr495439	regulatory region 495439	within coordinates
Tssr4481	transcription start site region 4481	1360 bp downstream
Tssr4482	transcription start site region 4482	360 bp upstream
Tssr126634	transcription start site region 126634	1023 bp upstream