rs30890050 SNP Detail

Summary

• ID
  rs30890050
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:51367733 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCAC ACTGGTTTGA AATTCAGCAC
  R
  TACAGACAAG TCGTCAACCA TGCAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39273830	mCV23506948	ABI	CRAMUS_MOUSE	f	SNP		A	A					G		A
ss49182477	NES12491427	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	G	A		A	A	A	A		A	A	A		A
ss139475212	ENSMUSSNP4266881	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A							A
ss324621305	CHEV_14_51749951	CHEVERUD	SCREENING_POP	f	SNP													A				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30890050					SNP	A	A	A	A	A	G	A	G	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49182477	NES12491427	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:51367733 () rs orientation: forward

Symbol	Name	Function Class
Rnase6	ribonuclease, RNase A family, 6	within coordinates
Rr404085	regulatory region 404085	1298 bp downstream
Rr491778	regulatory region 491778	1699 bp distal
Rr491779	regulatory region 491779	1198 bp distal
Rr491780	regulatory region 491780	749 bp proximal
Tssr125412	transcription start site region 125412	1350 bp downstream
Tssr125413	transcription start site region 125413	1329 bp downstream
Tssr125414	transcription start site region 125414	1283 bp downstream
Tssr125415	transcription start site region 125415	1258 bp downstream
Tssr125416	transcription start site region 125416	1226 bp downstream
Tssr125417	transcription start site region 125417	1204 bp downstream
Tssr125418	transcription start site region 125418	1163 bp downstream
Tssr125419	transcription start site region 125419	1137 bp downstream