rs30890185 SNP Detail

Summary

• ID
  rs30890185
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:142266174 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCAGTCTAA ATCCAAGAGG
  GCAGGGGACC CAGAAAACGC AATGACAATC ATTGATTAGT AGTGTTCCCT GGTGAGTACT
  ACAGACAGAC TTGTGTGCCA AGTGTGATTC TGTTTTCTCC TTTTTTTTTT TTTTTTTTTT
  GCATCGGTGA TGGAACACAC TGTAGGAAAG AAAAAAAGTC TCAATCTGCA AGATGTGGCG
  S
  GGTGATAACT GCAGAAAGTT CGGGGGGATC TGGGAAATTC CTCAGCTCAG CTGAGGTCAC
  AAATTCTGTT ATTTTGTTCA AGCCCTCAAC GACTGACTGA GTCATCAAGC AAGGAGCATG
  GTTTCGATTT CAGTTCCTTT TATCTCAATT TGTGTTTGGG CGGCTGTTAC TTTGCCACTT
  CTAACAGTGG CTGCTCCAAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45475588	mCV23580113	ABI	CRAMUS_MOUSE	f	SNP	C	C	G
ss136014988	ENSMUSSNP3259944	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	G
ss321002894	CHEV_3_142223377	CHEVERUD	SCREENING_POP	f	SNP				G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs30890185					SNP	C	C	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:142266174 () rs orientation: forward

Symbol	Name	Function Class
Gbp3	guanylate binding protein 3	within coordinates
Rr398085	regulatory region 398085	within coordinates
Rr586453	regulatory region 586453	within coordinates
Rr586454	regulatory region 586454	9 bp proximal
Rr586455	regulatory region 586455	416 bp proximal
Tssr32157	transcription start site region 32157	308 bp downstream
Tssr32158	transcription start site region 32158	279 bp downstream
Tssr32159	transcription start site region 32159	247 bp downstream
Tssr32160	transcription start site region 32160	199 bp downstream
Tssr32161	transcription start site region 32161	59 bp downstream
Tssr32162	transcription start site region 32162	125 bp upstream
Tssr32163	transcription start site region 32163	159 bp upstream
Tssr32164	transcription start site region 32164	192 bp upstream
Tssr32165	transcription start site region 32165	208 bp upstream
Tssr32166	transcription start site region 32166	544 bp upstream
Tssr32167	transcription start site region 32167	1271 bp upstream