rs30890272 SNP Detail

Summary

• ID
  rs30890272
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:191011821 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGCC CCTGATTAAT TAGAGAAGCC
  Y
  CCGACATCCT GTGAATCTGC TGTGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss44973362	mCV23988603	ABI	CRAMUS_MOUSE	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs30890272					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:191011821 () rs orientation: forward

Symbol	Name	Function Class
Gm37168	predicted gene, 37168	within coordinates
Gm70861	predicted gene, 70861	1754 bp upstream
Rr396719	regulatory region 396719	1669 bp downstream
Rr426095	regulatory region 426095	1803 bp distal
Rr426096	regulatory region 426096	1278 bp distal
Rr426097	regulatory region 426097	1100 bp proximal
Tssr373	transcription start site region 373	1203 bp downstream
Tssr10760	transcription start site region 10760	1790 bp upstream
Tssr10761	transcription start site region 10761	1799 bp upstream
Tssr10762	transcription start site region 10762	1829 bp upstream
Tssr10763	transcription start site region 10763	1843 bp upstream
Tssr10764	transcription start site region 10764	1873 bp upstream
Tssr15781	transcription start site region 15781	1996 bp upstream