rs30890690 SNP Detail

Summary

• ID
  rs30890690
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:46305608 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCAC ACAACACAAA CAAGGCTAAT
  Y
  AACACACAGC TCCCAAACAA CTGTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss44973468	mCV25010745	ABI	CRAMUS_MOUSE	f	SNP	C		T
ss146451668	ENSMUSSNP4279728	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs30890690					SNP	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:46305608 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10993	CpG island 10993	within coordinates
Psd	pleckstrin and Sec7 domain containing	within coordinates
Rr548704	regulatory region 548704	912 bp proximal
Tssr159621	transcription start site region 159621	788 bp downstream
Tssr159622	transcription start site region 159622	793 bp downstream
Tssr159623	transcription start site region 159623	813 bp downstream
Tssr159624	transcription start site region 159624	897 bp downstream
Tssr159625	transcription start site region 159625	954 bp downstream