rs30891000 SNP Detail

Summary

• ID
  rs30891000
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:136061050 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCAGGCTG CCACTGAAGC
  TGACATTGCA GCAGGAACCT TTGGAGGTCG AGGGAAGGGG AGCACGCATG GGCCGGGTGG
  GAGTGAGACA TGTCAATATG GCATCTACAG CAGATGGGGA GAGGGGAGCT ACCTGCCGTA
  AAAAGAAAAT GGAAGCCCAA CCTCCAACCA GTGTGAACCT GGACTGACAG GACAGGAGAC
  R
  GGGTGCTCTA TCCATGGGGT CTTTCCTTTA GACTCCATTT TACCGGAGAG AGCCAAACAA
  AGGCCTTCCC CCTTGATTCA TACTCCCCAG TCTGGGCCTG GCATGGTAAA ATATTGGAGT
  TCCCACTTCA GGAGCCTGGG GGCATGGGCA CCTGTATAGA AAATAAAGGG AAAGCTAGTG
  TTCCTTCCCA CAATGACTAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss49681388	NES12980308	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs30891000					SNP	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49681388	NES12980308	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:136061050 () rs orientation: forward

Symbol	Name	Function Class
Cpgi805	CpG island 805	1045 bp distal
Kif21b	kinesin family member 21B	within coordinates
Rr367010	regulatory region 367010	1801 bp upstream
Rr396320	regulatory region 396320	1901 bp downstream
Rr419369	regulatory region 419369	1913 bp distal
Rr419370	regulatory region 419370	1893 bp distal
Tssr9041	transcription start site region 9041	1931 bp downstream
Tssr9042	transcription start site region 9042	1908 bp downstream
Tssr9043	transcription start site region 9043	1871 bp downstream
Tssr9044	transcription start site region 9044	1818 bp downstream
Tssr9045	transcription start site region 9045	273 bp downstream
Tssr13915	transcription start site region 13915	244 bp upstream
Tssr13916	transcription start site region 13916	1796 bp downstream
Tssr13917	transcription start site region 13917	1844 bp downstream
Tssr13918	transcription start site region 13918	1868 bp downstream