rs30891001 SNP Detail

Summary

• ID
  rs30891001
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:136061049 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCCAGGCT GCCACTGAAG
  CTGACATTGC AGCAGGAACC TTTGGAGGTC GAGGGAAGGG GAGCACGCAT GGGCCGGGTG
  GGAGTGAGAC ATGTCAATAT GGCATCTACA GCAGATGGGG AGAGGGGAGC TACCTGCCGT
  AAAAAGAAAA TGGAAGCCCA ACCTCCAACC AGTGTGAACC TGGACTGACA GGACAGGAGA
  Y
  GGGGTGCTCT ATCCATGGGG TCTTTCCTTT AGACTCCATT TTACCGGAGA GAGCCAAACA
  AAGGCCTTCC CCCTTGATTC ATACTCCCCA GTCTGGGCCT GGCATGGTAA AATATTGGAG
  TTCCCACTTC AGGAGCCTGG GGGCATGGGC ACCTGTATAG AAAATAAAGG GAAAGCTAGT
  GTTCCTTCCC ACAATGACTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ
ss49681389	NES12980306	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ
rs30891001					SNP	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49681389	NES12980306	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:136061049 () rs orientation: forward

Symbol	Name	Function Class
Cpgi805	CpG island 805	1044 bp distal
Kif21b	kinesin family member 21B	within coordinates
Rr367010	regulatory region 367010	1802 bp upstream
Rr396320	regulatory region 396320	1900 bp downstream
Rr419369	regulatory region 419369	1912 bp distal
Rr419370	regulatory region 419370	1892 bp distal
Tssr9041	transcription start site region 9041	1930 bp downstream
Tssr9042	transcription start site region 9042	1907 bp downstream
Tssr9043	transcription start site region 9043	1870 bp downstream
Tssr9044	transcription start site region 9044	1817 bp downstream
Tssr9045	transcription start site region 9045	272 bp downstream
Tssr13915	transcription start site region 13915	243 bp upstream
Tssr13916	transcription start site region 13916	1797 bp downstream
Tssr13917	transcription start site region 13917	1845 bp downstream
Tssr13918	transcription start site region 13918	1869 bp downstream