rs30891002 SNP Detail

Summary

• ID
  rs30891002
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:136060798 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAAATCGA TGAGATAGGT
  TCTCTCTTCC TGCCCCAGAG CAGATGCCCA CCCCCCAACT CTGTATAATC CAGAGAGAAG
  GCACGGAGGC TTAGTATATA ATAGCTCAGG TGCTGAGGGA GGGAGATTGA GGGCTGCTGG
  TCCAGCAGCT CCTACAGCAG TCAGAACACC ACCCGTGCAC ACACTCTGCC TGGCACTGAA
  S
  AGCCTGAGAC AAAGAGGAGC CCTGCAGGTG TCTGGTGGGC TGGTGGGGCG GAGCCAGGCT
  GCCACTGAAG CTGACATTGC AGCAGGAACC TTTGGAGGTC GAGGGAAGGG GAGCACGCAT
  GGGCCGGGTG GGAGTGAGAC ATGTCAATAT GGCATCTACA GCAGATGGGG AGAGGGGAGC
  TACCTGCCGT AAAAAGAAAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss49681390	NES12980305	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs30891002					SNP	C	C	C	C	C	C	C	C	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49681390	NES12980305	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:136060798 () rs orientation: forward

Symbol	Name	Function Class
Cpgi805	CpG island 805	793 bp distal
Gm15850	predicted gene 15850	1877 bp upstream
Kif21b	kinesin family member 21B	within coordinates
Rr396320	regulatory region 396320	1649 bp downstream
Rr419368	regulatory region 419368	1888 bp distal
Rr419369	regulatory region 419369	1661 bp distal
Rr419370	regulatory region 419370	1641 bp distal
Tssr9041	transcription start site region 9041	1679 bp downstream
Tssr9042	transcription start site region 9042	1656 bp downstream
Tssr9043	transcription start site region 9043	1619 bp downstream
Tssr9044	transcription start site region 9044	1566 bp downstream
Tssr9045	transcription start site region 9045	21 bp downstream
Tssr13914	transcription start site region 13914	1875 bp upstream
Tssr13915	transcription start site region 13915	within coordinates