rs30891047 SNP Detail

Summary

• ID
  rs30891047
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:40123387 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CTTACCACT TTTTCCTGAA GCACCAAACC
  CGAGCCTGtc tccggacctg gaaatcctta acttacatta gcagtcactt tctctacatt
  aagcagcatg ttcccagctt ccaaagactc agacAAAAAG TTAAaaacaa aaccaaccaa
  M
  caaacaaaca aacaaaaagc caaacaaaGG CCCCCCTAAA ACAAGCCCAT CCATTTAATC
  CTCCTCCTAG TCAAGAAGAG TTCCTTGGGG GTGGGAGTGG GGATCTTGTG TCCCACTCAT
  TTAAAACCCT CCTTTTCTCT TTAATGGGAC                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss44974282	mCV23110161	ABI	CRAMUS_MOUSE	f	SNP	C	A	A
ss148977337	ENSMUSSNP178100	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		A
ss319697461	CHEV_1_40141072	CHEVERUD	SCREENING_POP	f	SNP				C	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30891047					SNP	C	A	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:40123387 () rs orientation: forward

Symbol	Name	Function Class
Cpgi194	CpG island 194	1534 bp proximal
Gm16894	predicted gene, 16894	within coordinates
Il1r2	interleukin 1 receptor, type II	485 bp upstream
Rr29353	regulatory region 29353	1013 bp proximal
Rr396010	regulatory region 396010	1509 bp upstream
Tssr62	transcription start site region 62	483 bp upstream
Tssr6411	transcription start site region 6411	506 bp upstream
Tssr6412	transcription start site region 6412	537 bp upstream
Tssr6413	transcription start site region 6413	548 bp upstream
Tssr6414	transcription start site region 6414	971 bp upstream
Tssr6415	transcription start site region 6415	1864 bp upstream
Tssr11414	transcription start site region 11414	1596 bp downstream