rs30891167 SNP Detail

Summary

• ID
  rs30891167
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:117163085 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTCT TTTCTCCTCT TTCTCCAACG
  R
  TTTTCTACCG GAGTGGCTAG CGGAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39232145	mCV23236843	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G
ss146924588	ENSMUSSNP3925896	ENSEMBL	ENSEMBL_Sanger	f	SNP		G		G
ss324842600	CHEV_14_117324895	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30891167					SNP	G	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:117163085 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6842	CpG island 6842	within coordinates
Gpc6	glypican 6	within coordinates
Rr497535	regulatory region 497535	within coordinates
Rr497536	regulatory region 497536	274 bp proximal
Rr497537	regulatory region 497537	465 bp proximal
Rr497538	regulatory region 497538	1387 bp proximal
Tssr127141	transcription start site region 127141	455 bp downstream
Tssr127142	transcription start site region 127142	393 bp downstream
Tssr127143	transcription start site region 127143	311 bp downstream
Tssr127144	transcription start site region 127144	279 bp downstream
Tssr127145	transcription start site region 127145	160 bp downstream
Tssr127146	transcription start site region 127146	130 bp downstream
Tssr127147	transcription start site region 127147	119 bp downstream
Tssr127148	transcription start site region 127148	102 bp downstream
Tssr127149	transcription start site region 127149	99 bp upstream
Tssr127150	transcription start site region 127150	130 bp upstream