rs30891896 SNP Detail

Summary

• ID
  rs30891896
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:136060329 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GGATTCCCA TTCCCGATAT CTGTAGGTAT
  TAGAAGTAAT CTGGCAGACA TTAAGAGGAA AGAGGACGGG ACTTAGTGGG TTCTTTTCCT
  AGGGGCACAC AGGTGCAGGG ACAGGAAATG CTACAAAGTT GAACTCTCTG TTCTTTGCAG
  W
  GAGTGAAGAT GCCTCCCACC AGCTCTCCCG ACTGTGTTTT GTGGTCTTCT CTTTAAGAAG
  AACATAGTGG GAGAGTAGCA ATGTGAGTGA GCTGGTCACC AACTCACAGA TGCACTGAGG
  AACATACATC TCTGGTTCTG GCCTTATAGA                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
ss45021157	mCV22544795	ABI	CRAMUS_MOUSE	f	SNP		A			A		T
ss49681394	NES12980299	PERLEGEN	MM_PANEL2	f	SNP	T	A	A	A		T	T	T		T	A	T
ss145553109	ENSMUSSNP429463	ENSEMBL	ENSEMBL_Sanger	f	SNP		A					T
ss319994790	CHEV_1_138029168	CHEVERUD	SCREENING_POP	f	SNP									T				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
rs30891896					SNP	T	A	A	A	A	T	T	T	T	T	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49681394	NES12980299	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:136060329 () rs orientation: forward

Symbol	Name	Function Class
Cpgi805	CpG island 805	324 bp distal
Gm15850	predicted gene 15850	1408 bp upstream
Kif21b	kinesin family member 21B	within coordinates
Rr396320	regulatory region 396320	1180 bp downstream
Rr419368	regulatory region 419368	1419 bp distal
Rr419369	regulatory region 419369	1192 bp distal
Rr419370	regulatory region 419370	1172 bp distal
Tssr9041	transcription start site region 9041	1210 bp downstream
Tssr9042	transcription start site region 9042	1187 bp downstream
Tssr9043	transcription start site region 9043	1150 bp downstream
Tssr9044	transcription start site region 9044	1097 bp downstream
Tssr9045	transcription start site region 9045	445 bp upstream
Tssr13914	transcription start site region 13914	1406 bp upstream
Tssr13915	transcription start site region 13915	454 bp downstream