rs30891897 SNP Detail

Summary

• ID
  rs30891897
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:136059829 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGCCCGGC TGCCGCAGGG
  GAGCGGCGGC CCAGCGGACT GATGGAAGGT GGCTTTGTTT GGGTGGTAAT TTCTGGCCCC
  TCTTGGGAGC ACTTAATGAT CAGAAAATCG AATAAACAAG GAAATCCGGT ATTTCACACC
  CAGCTTTGGC CCAGGCCGGA GCGTCTGTGT GTTTCCTCTT GTCCTCCCCA TGAGGCTGCT
  R
  TCTCATTCTG GGGTATAGGA GGGAATCCCC CCTCCCCCCA TCTACCCCAG TTAGCCAGTT
  CTACGCTCTT GATCCAGCTC ACCATCCTGG GAGCGGATAC AACAGACAAA GATCGGTTGT
  GGGACCCATG AAAGGGTTGG AATGGTGCCT TGGCTTTCCA CGGGGTGCCA ATGGCTTTTG
  GAGAAAGCCC TGCTGGTCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss49681395	NES12980298	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs30891897					SNP	A	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49681395	NES12980298	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:136059829 () rs orientation: forward

Symbol	Name	Function Class
Cpgi805	CpG island 805	within coordinates
Gm15850	predicted gene 15850	908 bp upstream
Kif21b	kinesin family member 21B	within coordinates
Rr396320	regulatory region 396320	680 bp downstream
Rr419368	regulatory region 419368	919 bp distal
Rr419369	regulatory region 419369	692 bp distal
Rr419370	regulatory region 419370	672 bp distal
Tssr9041	transcription start site region 9041	710 bp downstream
Tssr9042	transcription start site region 9042	687 bp downstream
Tssr9043	transcription start site region 9043	650 bp downstream
Tssr9044	transcription start site region 9044	597 bp downstream
Tssr9045	transcription start site region 9045	945 bp upstream
Tssr13914	transcription start site region 13914	906 bp upstream
Tssr13915	transcription start site region 13915	954 bp downstream