rs30891900 SNP Detail

Summary

• ID
  rs30891900
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:136058981 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTATGACCT TGGGGTGTTC
  CTCTTTGAGT CCCGTTCCTC ATTTAGGAAA GGAAGATCCC ACTGAGACTG AGGTACCATG
  ACTTCGAGGG CCGTGGTTCC CGAATGGTCA ACTTCCCAGG GACGAGTCCA TCATGCCACT
  CCCGCTTTCA CTCCCAAGCC CTCCAATCCT ACCCCGCCCC TCCCAGCCAC CCGATGGACG
  R
  GAGCCAAGAG GTCTCTTTAA AGGCTCAAGT CCCGCCTCTG CTGCTCGTTG GGGCCTTCTA
  TTGGCGGCCT CTGGGAGGGG CGGGGCCCTG CGCGGCTCTG AGGGGCTGGG GGTGGGTCCT
  GAGGTGGCTC GGCCCCCGCC CCCTTTGTTC GCGCTGCGGC GGGAGGTGGC GGTCCGGGTG
  GGAGGTGTGT GCGCGCGCGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss49681398	NES12980295	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs30891900					SNP	A	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49681398	NES12980295	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:136058981 () rs orientation: forward

Symbol	Name	Function Class
Cpgi805	CpG island 805	within coordinates
Gm15850	predicted gene 15850	60 bp upstream
Kif21b	kinesin family member 21B	146 bp upstream
Rr396320	regulatory region 396320	within coordinates
Rr419368	regulatory region 419368	71 bp distal
Rr419369	regulatory region 419369	within coordinates
Rr419370	regulatory region 419370	155 bp proximal
Tssr9041	transcription start site region 9041	120 bp upstream
Tssr9042	transcription start site region 9042	139 bp upstream
Tssr9043	transcription start site region 9043	168 bp upstream
Tssr9044	transcription start site region 9044	200 bp upstream
Tssr9045	transcription start site region 9045	1793 bp upstream
Tssr13914	transcription start site region 13914	58 bp upstream
Tssr13915	transcription start site region 13915	1802 bp downstream