rs30891901 SNP Detail

Summary

• ID
  rs30891901
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:136058698 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AAGCAAACT ATGAGCTTAA AGATGTTGCA
  GAGTGGAGGT GGGGAAATTT ACTTCCACAT CAACAAGAAT CCCCTTCAAT AAAGGTTGGC
  GGATTTACCG AAATAAATGC AGAAGGGACA CTTCGCTGAC TCTTTCAAAT TGCAAATTGC
  K
  CATCTCTATG AGATGCTTTG AGGTGCAGCA CACCGCCCag cccagagacc aggttcttac
  ccatgcctag ccacagactc gctgtatgac cttggggtgt tcctctttga gtcccgttcc
  tcatttagga aaggaagatc ccactgagac                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
ss45066934	mCV22544787	ABI	CRAMUS_MOUSE	f	SNP		T				G
ss49681399	NES12980392	PERLEGEN	MM_PANEL2	f	SNP	G	T	T	T	T	G	G		T	T	T
ss145553097	ENSMUSSNP3962606	ENSEMBL	ENSEMBL_Sanger	f	SNP		T				G
ss319994788	CHEV_1_138027537	CHEVERUD	SCREENING_POP	f	SNP								G				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
rs30891901					SNP	G	T	T	T	T	G	G	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49681399	NES12980392	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:136058698 () rs orientation: forward

Symbol	Name	Function Class
Cpgi805	CpG island 805	157 bp proximal
Gm15850	predicted gene 15850	within coordinates
Kif21b	kinesin family member 21B	429 bp upstream
Rr396320	regulatory region 396320	150 bp upstream
Rr419368	regulatory region 419368	within coordinates
Rr419369	regulatory region 419369	213 bp proximal
Rr419370	regulatory region 419370	438 bp proximal
Tssr9041	transcription start site region 9041	403 bp upstream
Tssr9042	transcription start site region 9042	422 bp upstream
Tssr9043	transcription start site region 9043	451 bp upstream
Tssr9044	transcription start site region 9044	483 bp upstream
Tssr13914	transcription start site region 13914	215 bp downstream