rs30891902 SNP Detail

Summary

• ID
  rs30891902
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:136058248 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGAGGTCT CCATCCACAT
  CTTGAGCTGC AGCTGGGTCC TCCTCTTGGG CCTTTTCCAG AGGAAGGAGC TGGGTGAAGC
  CTGGGAAGGG AGGGCAGCTG GTGAGGGGCC CTGTGAATGG TCCTAATGTT GGTTGTTGGG
  GGGCAGGGAG AAGAGTGGGG CTGGGAGGGT GCAGGGGTGA ACTGGAATGG GACTTGACTT
  Y
  ACATTACTGG TCTCCTTTCT CATAGCCCTG TGTTGAAAAG TCTCCTGGGC TAATCCTTTA
  TATACATTTC TGATGGCAGC GCTGGCCTCC TTTGCCTTCT AGCTTCTCCC AGGTATCTGG
  AGTCAAGTGC TTCTTTGTTC CTACTACTTC CCAGGCAGAT CTGGCCTCCC ACATCGACTC
  CCCCACACAC AACCCGCCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss49681400	NES12980391	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs30891902					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49681400	NES12980391	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:136058248 () rs orientation: forward

Symbol	Name	Function Class
Cpgi805	CpG island 805	607 bp proximal
Gm15850	predicted gene 15850	within coordinates
Kif21b	kinesin family member 21B	879 bp upstream
Rr396320	regulatory region 396320	600 bp upstream
Rr419367	regulatory region 419367	1709 bp distal
Rr419368	regulatory region 419368	within coordinates
Rr419369	regulatory region 419369	663 bp proximal
Rr419370	regulatory region 419370	888 bp proximal
Tssr9041	transcription start site region 9041	853 bp upstream
Tssr9042	transcription start site region 9042	872 bp upstream
Tssr9043	transcription start site region 9043	901 bp upstream
Tssr9044	transcription start site region 9044	933 bp upstream
Tssr13914	transcription start site region 13914	665 bp downstream