rs30892085 SNP Detail

Summary

• ID
  rs30892085
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:51366278 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATGTAATTGC AGGTGCCCAA AGAGGCCAAA AGCACCAGCT
  ATATATATAT ATATATATAT TTTTTTTTTT TTTTTGTTAA AAAAACCTAA AATCATAGGG
  Y
  TTCAAAAACG GAAGCTACAG TGAAAAAGGA AGTGCTAAGC CCACAGCAAG TGATCAGGTC
  CTTAAACCTC TGAGCTTTGA GGCTACTTGG TTTTTGAGT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss49182495	NES12491407	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	C	T	C	T		C	T		C
ss324621295	CHEV_14_51748496	CHEVERUD	SCREENING_POP	f	SNP											T			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs30892085					SNP	T	T	T	T	C	T	C	T	C	T	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49182495	NES12491407	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:51366278 () rs orientation: forward

Symbol	Name	Function Class
Rnase6	ribonuclease, RNase A family, 6	within coordinates
Rr404085	regulatory region 404085	within coordinates
Rr491778	regulatory region 491778	244 bp distal
Rr491779	regulatory region 491779	within coordinates
Tssr125412	transcription start site region 125412	84 bp upstream
Tssr125413	transcription start site region 125413	109 bp upstream
Tssr125414	transcription start site region 125414	159 bp upstream
Tssr125415	transcription start site region 125415	186 bp upstream
Tssr125416	transcription start site region 125416	218 bp upstream
Tssr125417	transcription start site region 125417	234 bp upstream
Tssr125418	transcription start site region 125418	264 bp upstream
Tssr125419	transcription start site region 125419	297 bp upstream