rs30892087 SNP Detail

Summary

• ID
  rs30892087
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:51365643 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCAC CCTAAACCTT GCCTGGGCAG
  K
  ACAGTAGATC TGGCCAAGTT GGTGT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39300366	mCV23506934	ABI	CRAMUS_MOUSE	f	SNP	G	G	G					T		G
ss49182497	NES12491405	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	T	G		G	G	G		G	G	G		G
ss139475185	ENSMUSSNP2728810	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G							G
ss324621290	CHEV_14_51747861	CHEVERUD	SCREENING_POP	f	SNP												G				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30892087					SNP	G	G	G	G	G	T	G	T	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49182497	NES12491405	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:51365643 () rs orientation: forward

Symbol	Name	Function Class
Rnase6	ribonuclease, RNase A family, 6	within coordinates
Rr404085	regulatory region 404085	492 bp upstream
Rr491778	regulatory region 491778	within coordinates
Rr491779	regulatory region 491779	587 bp proximal
Tssr125412	transcription start site region 125412	719 bp upstream
Tssr125413	transcription start site region 125413	744 bp upstream
Tssr125414	transcription start site region 125414	794 bp upstream
Tssr125415	transcription start site region 125415	821 bp upstream
Tssr125416	transcription start site region 125416	853 bp upstream
Tssr125417	transcription start site region 125417	869 bp upstream
Tssr125418	transcription start site region 125418	899 bp upstream
Tssr125419	transcription start site region 125419	932 bp upstream