rs30892093 SNP Detail

Summary

• ID
  rs30892093
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:51364773 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTGGAATCC CTACAGTAGA AAGGGAAAAC CAGATCTTCC
  AAATTGTCCT CTGATCGACA CACACGCCCC ATGACACAAG TTTGTGTGTG TGTGTGTGAG
  Y
  GGCAGTGTCA AAACATATAC ACTAAATATA TATAAACAAA ACCAAAACAT ATATATAAAT
  TAAATGCATA ATTAAAAAGA GAGGAGGCAA GAGTGTGAT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	SM/J	WSB/EiJ
ss39251039	mCV23506650	ABI	CRAMUS_MOUSE	f	SNP		T	T				C		T
ss49182505	NES12491399	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	C	T		C	T	C	T		C		C
ss139475170	ENSMUSSNP5582164	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						T
ss324621284	CHEV_14_51746991	CHEVERUD	SCREENING_POP	f	SNP												T		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	SM/J	WSB/EiJ
rs30892093					SNP	T	T	T	T	C	T	C	C	T	C	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49182505	NES12491399	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:51364773 () rs orientation: forward

Symbol	Name	Function Class
Rnase6	ribonuclease, RNase A family, 6	within coordinates
Rr404085	regulatory region 404085	1362 bp upstream
Rr491778	regulatory region 491778	159 bp proximal
Rr491779	regulatory region 491779	1457 bp proximal
Tssr125412	transcription start site region 125412	1589 bp upstream
Tssr125413	transcription start site region 125413	1614 bp upstream
Tssr125414	transcription start site region 125414	1664 bp upstream
Tssr125415	transcription start site region 125415	1691 bp upstream
Tssr125416	transcription start site region 125416	1723 bp upstream
Tssr125417	transcription start site region 125417	1739 bp upstream
Tssr125418	transcription start site region 125418	1769 bp upstream
Tssr125419	transcription start site region 125419	1802 bp upstream