rs30892395 SNP Detail

Summary

• ID
  rs30892395
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:51343829 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTCTTTTT CAGTTCCTCT
  CTAGTCTATG AACTCTCATG TCCCTTAGTG TCCCTATACA TTCTGGTCAA ATACAAATGG
  CCATTAGATC CATCATGTGA CATCTGACTT TGTCTCCTTT ACTCCACTGA AAGTGATCCC
  TCTCATACAC AAGACCTGAA ATAAGAACTC AGAAGTGGCC TTTGCTAAAA AGCACCAATT
  S
  TTTATGCAAC AAATTGAGTG TGTTGCATGA TTAAGCATTA TTGATGTTTA TGGCTGTGTA
  TACCCAATGG ATGACCAACA GTAGGCTAAT ATTTCTGGAT ACATGTGATT TTTCCTTTCT
  GAGCCTTCTG TGCTCAAGTG GAGTCCAAGA TCAACAGGCC TGATAGATAA ACAGAGTAAT
  AGCTTTTCCT CCTTAGGATT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	LG/J	MOLF/EiJ	SM/J
ss49182621	NES12492273	PERLEGEN	MM_PANEL2	f	SNP		G	G	G	C			C
ss139474679	ENSMUSSNP2628883	ENSEMBL	ENSEMBL_Sanger	f	SNP	G					C
ss324621077	CHEV_14_51726047	CHEVERUD	SCREENING_POP	f	SNP							G		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	LG/J	MOLF/EiJ	SM/J
rs30892395					SNP	G	G	G	G	C	C	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49182621	NES12492273	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:51343829 () rs orientation: forward

Symbol	Name	Function Class
Rnase4	ribonuclease, RNase A family 4	221 bp downstream
Rr288977	regulatory region 288977	1229 bp distal
Rr295428	regulatory region 295428	within coordinates
Tssr125402	transcription start site region 125402	1483 bp downstream
Tssr125403	transcription start site region 125403	1331 bp downstream
Tssr125404	transcription start site region 125404	1191 bp downstream
Tssr125405	transcription start site region 125405	964 bp downstream
Tssr125406	transcription start site region 125406	887 bp downstream
Tssr128409	transcription start site region 128409	965 bp upstream
Tssr128410	transcription start site region 128410	945 bp upstream