rs30892399 SNP Detail

Summary

• ID
  rs30892399
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:51343750 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGAC ATCTGACTTT GTCTCCTTTA
  Y
  TCCACTGAAA GTGATCCCTC TCATA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	LG/J	MOLF/EiJ	SM/J
ss49182625	NES12492270	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C			T
ss139474673	ENSMUSSNP6608496	ENSEMBL	ENSEMBL_Sanger	f	SNP					T
ss324621075	CHEV_14_51725968	CHEVERUD	SCREENING_POP	f	SNP						T		T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	LG/J	MOLF/EiJ	SM/J
rs30892399					SNP	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49182625	NES12492270	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:51343750 () rs orientation: forward

Symbol	Name	Function Class
Rnase4	ribonuclease, RNase A family 4	142 bp downstream
Rr288977	regulatory region 288977	1150 bp distal
Rr295428	regulatory region 295428	within coordinates
Tssr125402	transcription start site region 125402	1404 bp downstream
Tssr125403	transcription start site region 125403	1252 bp downstream
Tssr125404	transcription start site region 125404	1112 bp downstream
Tssr125405	transcription start site region 125405	885 bp downstream
Tssr125406	transcription start site region 125406	808 bp downstream
Tssr128409	transcription start site region 128409	886 bp upstream
Tssr128410	transcription start site region 128410	866 bp upstream