rs30892401 SNP Detail

Summary

• ID
  rs30892401
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:51343631 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGTG TCGGGATTTG TGTTCTCCTG
  Y
  TCTTTTTCAG TTCCTCTCTA GTCTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
ss49182627	NES12492268	PERLEGEN	MM_PANEL2	f	SNP		C	C	C	T	C			C	C
ss139474670	ENSMUSSNP1754320	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C					C
ss324621074	CHEV_14_51725849	CHEVERUD	SCREENING_POP	f	SNP								C			C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
rs30892401					SNP	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49182627	NES12492268	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:51343631 () rs orientation: forward

Symbol	Name	Function Class
Rnase4	ribonuclease, RNase A family 4	23 bp downstream
Rr288977	regulatory region 288977	1031 bp distal
Rr295428	regulatory region 295428	within coordinates
Tssr125402	transcription start site region 125402	1285 bp downstream
Tssr125403	transcription start site region 125403	1133 bp downstream
Tssr125404	transcription start site region 125404	993 bp downstream
Tssr125405	transcription start site region 125405	766 bp downstream
Tssr125406	transcription start site region 125406	689 bp downstream
Tssr128409	transcription start site region 128409	767 bp upstream
Tssr128410	transcription start site region 128410	747 bp upstream