rs30892403 SNP Detail

Summary

• ID
  rs30892403
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:51343155 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCTC AGACAAAAAT CCAACTGGAC
  R
  GGCTACTCAC AAAAGGTGTT ACCCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
ss49182629	NES12492263	PERLEGEN	MM_PANEL2	f	SNP		A	A	A	G	A			A	A
ss139474661	ENSMUSSNP5722458	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A					A
ss324621071	CHEV_14_51725373	CHEVERUD	SCREENING_POP	f	SNP								A			A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
rs30892403					SNP	A	A	A	A	G	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49182629	NES12492263	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:51343155 () rs orientation: forward

Symbol	Name	Function Class
Rnase4	ribonuclease, RNase A family 4	within coordinates
Rr288976	regulatory region 288976	1755 bp distal
Rr288977	regulatory region 288977	555 bp distal
Rr295428	regulatory region 295428	471 bp proximal
Rr299307	regulatory region 299307	1964 bp distal
Tssr125402	transcription start site region 125402	809 bp downstream
Tssr125403	transcription start site region 125403	657 bp downstream
Tssr125404	transcription start site region 125404	517 bp downstream
Tssr125405	transcription start site region 125405	290 bp downstream
Tssr125406	transcription start site region 125406	213 bp downstream
Tssr128409	transcription start site region 128409	291 bp upstream
Tssr128410	transcription start site region 128410	271 bp upstream