rs30892461 SNP Detail

Summary

• ID
  rs30892461
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:36792173 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCATTTTTT TAGGAACAAA ACCCAGGATT TTGTAAATTC
  AAGGTGAGGG TTCTACCACT AAAAGCTGCA GCCCCCCCCC CACCGCCGCC CCATTTCTGA
  Y
  GACCCATAAT TGTGAATTAG TTCTAATTTA GAAAGAAATC TTTTTTGTTT TTGTTTTTTC
  GAGACAGGGT TTCTCTGTAT AGCCCTAGCT GTCCTGGAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	LG/J	SM/J
ss44974607	mCV24739182	ABI	CRAMUS_MOUSE	f	SNP	T	C
ss146350023	ENSMUSSNP6559824	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss325798626	CHEV_19_36889263	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	LG/J	SM/J
rs30892461					SNP	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:36792173 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10781	CpG island 10781	688 bp proximal
Gm56662	predicted gene, 56662	within coordinates
Rr357666	regulatory region 357666	1373 bp distal