rs3089253 SNP Detail

Summary

• ID
  rs3089253
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  103
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:170979832 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TAAAA CAAAGAGCTA AATTAAAGGG
  R
  CATCTGTTAC ATTTTATTCT TATTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/Sv	A	A/J	AKR	AKR/J	BALB/cBy	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/He	C3H/HeJ	C57BL/6	C57BL/6J	CAST/EiJ	DBA/2	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss4326131	M-10796-1	WIMOUSESNPS	MITROCHE_POP	f	SNP		G	G		A		A			G		A		A	G
ss45021314	mCV24422408	ABI	CRAMUS_MOUSE	r	SNP				C									T			C
ss49750967	NES13034816	PERLEGEN	MM_PANEL2	r	SNP	C			C		T		T	T		C			T		C	C	C		T	C	C	C		C
ss119995578	PARCsnp_1.11866	PARC_SEQ	INBRED	r	SNP													T			C
ss119997123	PARCsnp_1.00830	PARC_SEQ	INBRED	r	SNP													T			C
ss146155029	ENSMUSSNP4442424	ENSEMBL	ENSEMBL_Sanger	r	SNP				C												C
ss320116730	CHEV_1_173082394	CHEVERUD	SCREENING_POP	r	SNP																			C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/Sv	A	A/J	AKR	AKR/J	BALB/cBy	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/He	C3H/HeJ	C57BL/6	C57BL/6J	CAST/EiJ	DBA/2	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs3089253					SNP	G	G	G	G	A	A	A	A	A	G	G	A	A	A	G	G	G	G	G	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49750967	NES13034816	PERLEGEN	MM_PANEL	r	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170979832 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi1011	CpG island 1011	1503 bp distal
Mpz	myelin protein zero	within coordinates
Rr396555	regulatory region 396555	1311 bp downstream
Rr423226	regulatory region 423226	1683 bp distal
Rr423227	regulatory region 423227	1540 bp distal
Rr423228	regulatory region 423228	700 bp distal
Sdhc	succinate dehydrogenase complex, subunit C, integral membrane protein	1623 bp upstream
Tssr14985	transcription start site region 14985	1654 bp upstream