rs30892535 SNP Detail

Summary

• ID
  rs30892535
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135982533 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTTGCTCA CCATCTTTGC
  CAACTGTGTG GCCCTGGCAG TGTACCTGCC CATGCCAGAG GATGACAACA ACACTCTGAA
  CCTCGGCCTG GTAAGCAAGC CTTCCCACCC TTCCTCTCAA GCTCTGCAGC TCCAGCCTGG
  GAGTCACTTG GTTTCTGTGG GAGATGCTGC TACCGTGGCT CCCTCACAGC GTAGACTGGC
  R
  TCCTCACTGC TGAGCTACTG AGTGGCCCCG AAGCTTCCCA GACTAAACGT GTTCAGCCCA
  ATTCCATGAT AGCTGTCAGA CAATATTCAC AGTGCCAAGC ACCCAACAGG TGCAAACTCA
  TGGCGCTTTC CCAAGAACTC TCAGAAGTGG TACCAAGACA GATGTGGAAG GCTGGGCCTC
  AGCAAGGTGA ACCAGGGGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss49681894	NES12982398	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs30892535					SNP	G	G	G	G	G	G	G	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49681894	NES12982398	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135982533 () rs orientation: forward

Symbol	Name	Function Class
Cacna1s	calcium channel, voltage-dependent, L type, alpha 1S subunit	within coordinates
Rr419347	regulatory region 419347	978 bp proximal
Tssr9038	transcription start site region 9038	1999 bp downstream
Tssr9039	transcription start site region 9039	1969 bp downstream
Tssr9040	transcription start site region 9040	1837 bp downstream