rs30892536 SNP Detail

Summary

• ID
  rs30892536
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135982404 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CATGCCCTC AACCCCACAG ATCCCACAGA
  TGGCTCCAGG GCTCTCCTTA ACCCTGGTTG CAGACCCTTC GAGACCATCA TCTTGCTCAC
  CATCTTTGCC AACTGTGTGG CCCTGGCAGT GTACCTGCCC ATGCCAGAGG ATGACAACAA
  Y
  ACTCTGAACC TCGGCCTGGT AAGCAAGCCT TCCCACCCTT CCTCTCAAGC TCTGCAGCTC
  CAGCCTGGGA GTCACTTGGT TTCTGTGGGA GATGCTGCTA CCGTGGCTCC CTCACAGCGT
  AGACTGGCGT CCTCACTGCT GAGCTACTGA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
ss49681895	NES12982397	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C		C	C	C
ss319994518	CHEV_1_137951243	CHEVERUD	SCREENING_POP	f	SNP										T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
rs30892536					SNP	C	C	C	C	C	C	T	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49681895	NES12982397	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135982404 () rs orientation: forward

Symbol	Name	Function Class
Cacna1s	calcium channel, voltage-dependent, L type, alpha 1S subunit	within coordinates
Rr419347	regulatory region 419347	1107 bp proximal
Tssr9037	transcription start site region 9037	1905 bp downstream
Tssr9038	transcription start site region 9038	1870 bp downstream
Tssr9039	transcription start site region 9039	1840 bp downstream
Tssr9040	transcription start site region 9040	1708 bp downstream