rs30892537 SNP Detail

Summary

• ID
  rs30892537
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135982220 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTCTGGGG CGTACGGGGG
  GAGGGTGTCC TGGGAGTGCA AGCCTGCACA CATGAGTGTG TACACATAGT TCTGAAAATC
  TGGTTTTCCT CCCATTTCCC CCTCTCCCGA TCCTACTCAG CCTGAACATA ATCAAACTCC
  AACCCTACCC CCGAGCCACT TTGGGGTACA AGCCCCCCGC CACATGACTC TCTCTTAGCA
  W
  TATAGTGACT ATTCAGACTG GCCTTTAGGA ATTTCATGCC CTCAACCCCA CAGATCCCAC
  AGATGGCTCC AGGGCTCTCC TTAACCCTGG TTGCAGACCC TTCGAGACCA TCATCTTGCT
  CACCATCTTT GCCAACTGTG TGGCCCTGGC AGTGTACCTG CCCATGCCAG AGGATGACAA
  CAACACTCTG AACCTCGGCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ
ss45128158	mCV23623372	ABI	CRAMUS_MOUSE	f	SNP		A	T					T
ss49681896	NES12982396	PERLEGEN	MM_PANEL2	f	SNP	A		T	T	T	T	T	T	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ
rs30892537					SNP	A	A	T	T	T	T	T	T	T	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49681896	NES12982396	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135982220 () rs orientation: forward

Symbol	Name	Function Class
Cacna1s	calcium channel, voltage-dependent, L type, alpha 1S subunit	within coordinates
Tssr9037	transcription start site region 9037	1721 bp downstream
Tssr9038	transcription start site region 9038	1686 bp downstream
Tssr9039	transcription start site region 9039	1656 bp downstream
Tssr9040	transcription start site region 9040	1524 bp downstream