rs30892538 SNP Detail

Summary

• ID
  rs30892538
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135981597 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGAGTGGGT TCTGAGAGAG TCAGGAATAT
  TTGAAATATT TTTGACGTGC TCTGGAGGAA TGGGATTCCA TCAGCTGTTC CTTGGGAAAA
  TGGAGAATGA GGAGTAGCTG GAAGGATACG GGAGCCATGG AGAGACAGCG GGTCTGGAGT
  Y
  GAGTCTGATC CGCATTGCTA CACTCTGCCA GGCCACATCA CGTCCAGCCC CCTTCCTCCT
  TGCCCTCTCT GGTGAGAGCA GCTTCCCCTG GCAGGGCATC CCTTTTCTTG AGCCCACTCT
  CTTACAGATC TATTCTGTGC TACTCCCCCC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
ss45015979	mCV23623381	ABI	CRAMUS_MOUSE	f	SNP							C	T
ss49681897	NES12982394	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		T	C		C	C	C
ss319994515	CHEV_1_137950436	CHEVERUD	SCREENING_POP	f	SNP										T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
rs30892538					SNP	C	C	C	C	C	C	C	T	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49681897	NES12982394	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135981597 () rs orientation: forward

Symbol	Name	Function Class
Cacna1s	calcium channel, voltage-dependent, L type, alpha 1S subunit	within coordinates
Rr419347	regulatory region 419347	1914 bp proximal
Tssr9037	transcription start site region 9037	1098 bp downstream
Tssr9038	transcription start site region 9038	1063 bp downstream
Tssr9039	transcription start site region 9039	1033 bp downstream
Tssr9040	transcription start site region 9040	901 bp downstream