rs30892539 SNP Detail

Summary

• ID
  rs30892539
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135981444 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGCTGGCGA GCAAACTTGG ATGTTTTAGC
  TCAGAAGTAG TACCCTGGGG GACAGGGACC TCAATCTCTC TCTAGGTTTG TTCTGGAAAT
  AACAATGATA ATATCTGGGC TATTTGGGGG GAGTAAGGAG GGGCTGCAGA GAGGAGGCCC
  S
  TGTTGAGTGG GTTCTGAGAG AGTCAGGAAT ATTTGAAATA TTTTTGACGT GCTCTGGAGG
  AATGGGATTC CATCAGCTGT TCCTTGGGAA AATGGAGAAT GAGGAGTAGC TGGAAGGATA
  CGGGAGCCAT GGAGAGACAG CGGGTCTGGA                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
ss45106393	mCV23623382	ABI	CRAMUS_MOUSE	f	SNP							G	C
ss49681898	NES12982393	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G		C	G	G		G	G	G
ss145551591	ENSMUSSNP5237303	ENSEMBL	ENSEMBL_Sanger	f	SNP								C
ss319994514	CHEV_1_137950283	CHEVERUD	SCREENING_POP	f	SNP											C				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
rs30892539					SNP	G	G	G	G	G	G	G	C	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49681898	NES12982393	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135981444 () rs orientation: forward

Symbol	Name	Function Class
Cacna1s	calcium channel, voltage-dependent, L type, alpha 1S subunit	within coordinates
Cpgi803	CpG island 803	1943 bp distal
Tssr9037	transcription start site region 9037	945 bp downstream
Tssr9038	transcription start site region 9038	910 bp downstream
Tssr9039	transcription start site region 9039	880 bp downstream
Tssr9040	transcription start site region 9040	748 bp downstream