rs30892540 SNP Detail

Summary

• ID
  rs30892540
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135980881 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGAATGGAA GTATCCTTTC TAGCACCTGA GCGAGATGGA
  GCAGGGAGTG GGTGGGAGGC AGAGGTGGAA GGTACGGGGT GGTCACAAAG CTTGGACTTT
  W
  AGCATCAGGG TGACCCAGGC TCTTGGGAAA GGGGTGAACC TACACCTAGA CCAGCAAAAG
  GAACCTTTGC GAAAGCAGGA AGGGAGGTCT CCGCCACAAT                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss49681899	NES12982392	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs30892540					SNP	T	T	T	T	T	T	A	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49681899	NES12982392	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135980881 () rs orientation: forward

Symbol	Name	Function Class
Ascl5	achaete-scute family bHLH transcription factor 5	1773 bp downstream
Cacna1s	calcium channel, voltage-dependent, L type, alpha 1S subunit	within coordinates
Cpgi803	CpG island 803	1380 bp distal
Rr419346	regulatory region 419346	1895 bp distal
Tssr9037	transcription start site region 9037	382 bp downstream
Tssr9038	transcription start site region 9038	347 bp downstream
Tssr9039	transcription start site region 9039	317 bp downstream
Tssr9040	transcription start site region 9040	185 bp downstream