rs30892542 SNP Detail

Summary

• ID
  rs30892542
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135980135 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGTTCTAG GGAGAAAGCA
  CACAGACATT GTCTAGTGAG GGATTGGAGG ACCAGGGGCC CTGTGAGAGC AGTGCACATT
  CAAGGTTGCC TGGAGCCTTT CCCTCTGGTA GGAGAGGGGC TCCATATTTG CCAGAAGAAG
  GCATTGGGGG CGGCAAGTGT GAGAGGGTCC TGGGCAGATC CTGACAGACA CTGAGACTGG
  Y
  GTGAGTGGAG CTATGCTGAG CTAGGCCACC ACCCAACACA TTCTCTGGAC AGAGCCACGG
  AGTTGGGGTG GGGAGAAACT TAATCTCCAT CTAAGGAACC TGTTTGGAGT TTGTGGCTCT
  ACTCCACGGG TTCCTCTCCC TGACCCTCAT TGCCCCAGCT GTGAAGCCTT CCTGTCTCCC
  ACTGCCCCTA CCCCGTCTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ
ss49681901	NES12982390	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ
rs30892542					SNP	C	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49681901	NES12982390	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135980135 () rs orientation: forward

Symbol	Name	Function Class
Ascl5	achaete-scute family bHLH transcription factor 5	1027 bp downstream
Cacna1s	calcium channel, voltage-dependent, L type, alpha 1S subunit	414 bp upstream
Cpgi803	CpG island 803	634 bp distal
Rr419345	regulatory region 419345	1583 bp distal
Rr419346	regulatory region 419346	1149 bp distal
Tssr9037	transcription start site region 9037	357 bp upstream
Tssr9038	transcription start site region 9038	374 bp upstream
Tssr9039	transcription start site region 9039	407 bp upstream
Tssr9040	transcription start site region 9040	549 bp upstream