rs30892554 SNP Detail

Summary

• ID
  rs30892554
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:136057648 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGTTAGGAG AACAAACAAG AACAAAAGCA CCAAGTACCT
  CCCCGTGTAA GCACCGCTCA GCTCTCCACA TCCTCCTTTT GTTAGAAGAC AGGGAGCAGC
  K
  TCCCAATTTC CCAACACTGT CTCTTGCTCT AAGGAATTTG ATTCACTGGC TTTGGGTTTC
  AGATGCTAAT ATTAATAAAA TATATAGGAT CCCACCAGGA                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss49681402	NES12980389	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	T	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs30892554					SNP	G	G	G	G	T	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49681402	NES12980389	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:136057648 () rs orientation: forward

Symbol	Name	Function Class
Cpgi805	CpG island 805	1207 bp proximal
Gm15850	predicted gene 15850	within coordinates
Kif21b	kinesin family member 21B	1479 bp upstream
Rr396320	regulatory region 396320	1200 bp upstream
Rr419367	regulatory region 419367	1109 bp distal
Rr419368	regulatory region 419368	95 bp proximal
Rr419369	regulatory region 419369	1263 bp proximal
Rr419370	regulatory region 419370	1488 bp proximal
Tssr9041	transcription start site region 9041	1453 bp upstream
Tssr9042	transcription start site region 9042	1472 bp upstream
Tssr9043	transcription start site region 9043	1501 bp upstream
Tssr9044	transcription start site region 9044	1533 bp upstream
Tssr13914	transcription start site region 13914	1265 bp downstream